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GrainGenes Marker Report: POPA1_1531

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Locus	POPA1_1531
Type	SNP
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 119.84 Hordeum-OPA123-2008-4H 119.84
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_6209
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_1531 Most representative HarvEST:Barley Assembly #32 Unigene = 10081 Most representative HarvEST:Barley Assembly #35 Unigene = 6209 HarvEST Unigene 35 Probe Set = Contig12587_at Unigene 35 Rice Locus = LOC_Os03g01830 Description for best rice BLAST hit to Unigene 35 member = DEAD/DEAH box helicase, putative, expressed; E value = 2E-74 Original SNP name = ConsensusGBS0701-1 Original SNP name = ABC01616_1_514 Description for best rice BLAST hit to Unigene 35 member = protein DEAD/DEAH box helicase, putative, expressed; E value = 2E-74 BLAST hit in the rice genome = DEAD/DEAH box helicase, putative, expressed
Probe for Locus	HAR35_6209
Locus	POPA1_1531
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare