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GrainGenes Marker Report: POPA1_1534

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Locus	POPA1_1534
Type	SNP
Synonym	Other name 11_11534 BOPA1_11_11534 BOPA1_ConsensusGBS0708-6 Synonym 11_11534
Chromosome	6H
Chromosome Arm	6HL
Map	Barley, 2012 9KSNP 6H 105.7 Hordeum-OPA-2009-6H 112.32 Hordeum-OPA123-2008-6H 112.32 Hordeum-OPAConsensus-2011-6H 122.74
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_21258 i_11_11534
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_1534 Marker name in barley OPA1 = 11_11534 Original SNP name = ConsensusGBS0708-6 Most representative HarvEST:Barley Assembly #32 Unigene = 16980 Most representative HarvEST:Barley Assembly #35 Unigene = 21258 HarvEST Unigene 35 Probe Set = Contig20457_at; HA11O05u_at; HA11O05u_s_at Unigene 35 Rice Locus = LOC_Os02g56170 Description for best rice BLAST hit to Unigene 35 member = PAP-specific phosphatase, putative, expressed; E value = 2E-56 HarvEST Unigene 35 Probe Set = Contig20457_at, HA11O05u_at, HA11O05u_s_at Description for best rice BLAST hit to Unigene 35 member = protein PAP-specific phosphatase, putative, expressed; E value = 2E-56 BLAST hit in the rice genome = PAP-specific phosphatase, putative, expressed
Probe for Locus	HAR35_21258
Locus	POPA1_1534
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare