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GrainGenes Marker Report: POPA2_0002

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Locus
POPA2_0002
Type
SNP
Synonym
Other name11_20002
BOPA1_10012-1239
BOPA1_11_20002
Synonym11_20002
Chromosome
3H
Chromosome Arm
3HL
Map
Barley, 2012 9KSNP 3H51.6
Hordeum-OPA-2009-3H56.4
Hordeum-OPA123-2008-3H56.4
Hordeum-OPAConsensus-2011-3H65.25
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_19659
i_11_20002
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_0002
Marker name in barley OPA1 = 11_20002
Original SNP name = 10012-1239
Most representative HarvEST:Barley Assembly #32 Unigene = 10012
Most representative HarvEST:Barley Assembly #35 Unigene = 19659
HarvEST Unigene 35 Probe Set = Contig12893_at
Unigene 35 Rice Locus = LOC_Os01g43160
Description for best rice BLAST hit to Unigene 35 member = polygalacturonase, putative, expressed; E value = 0
Marker name in barley Pilot OPA2 = 2_0002
Description for best rice BLAST hit to Unigene 35 member = protein polygalacturonase, putative, expressed; E value = 0
BLAST hit in the rice genome = polygalacturonase, putative, expressed


Probe for Locus
HAR35_19659
Locus
POPA2_0002
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare