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GrainGenes Marker Report: POPA2_0004

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Locus	POPA2_0004
Type	SNP
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 56.99 Hordeum-OPA123-2008-2H 56.99 Hordeum-OWB-OPA2008-2H 71.665
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_19486
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_0004 Most representative HarvEST:Barley Assembly #32 Unigene = 10062 Most representative HarvEST:Barley Assembly #35 Unigene = 19486 HarvEST Unigene 35 Probe Set = Contig12899_at Unigene 35 Rice Locus = LOC_Os07g39350 Description for best rice BLAST hit to Unigene 35 member = proton myo-inositol cotransporter, putative, expressed; E value = 6E-49 Marker name in barley Pilot OPA2 = 2_0004 Original SNP name = 10062-616 Description for best rice BLAST hit to Unigene 35 member = protein proton myo-inositol cotransporter, putative, expressed; E value = 6E-49 BLAST hit in the rice genome = proton myo-inositol cotransporter, putative, expressed
Probe for Locus	HAR35_19486
Locus	POPA2_0004
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare