Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_0008

[Submit comment/correction]

Locus	POPA2_0008
Type	SNP
Synonym	Other name 11_20008 BOPA1_1011-1338 BOPA1_11_20008 Synonym 11_20008
Chromosome	5H
Map	Hordeum-OPAConsensus-2011-5H 141.48
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_14331 i_11_20008
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0008 Marker name in barley OPA1 = 11_20008 Original SNP name = 1011-1338 Most representative HarvEST:Barley Assembly #32 Unigene = 1011 Most representative HarvEST:Barley Assembly #35 Unigene = 14331 HarvEST Unigene 35 Probe Set = Contig1506_s_at; Contig1516_s_at Unigene 35 Rice Locus = LOC_Os03g56810 Description for best rice BLAST hit to Unigene 35 member = tubulin beta-7 chain, putative, expressed; E value = 0 BLAST hit in the rice genome = tubulin beta-7 chain, putative, expressed
Probe for Locus	HAR35_14331
Locus	POPA2_0008 POPA1_0004
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare