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GrainGenes Marker Report: POPA2_0011

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Locus	POPA2_0011
Type	SNP
Synonym	Other name 12_20011 BOPA2_12_20011 Synonym 12_20011
Chromosome	4H
Chromosome Arm	4HS
Map	Hordeum-OPA-2009-4H 40.36 Hordeum-OPA123-2008-4H 40.36 Hordeum-OPAConsensus-2011-4H 44.99 Hordeum-OWB-OPA2008-4H 41.201
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_19469 i_12_20011
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 2_0011 Marker name in barley OPA1 = 12_20011 Original SNP name = 10233-249 Most representative HarvEST:Barley Assembly #32 Unigene = 10233 Most representative HarvEST:Barley Assembly #35 Unigene = 19469 HarvEST Unigene 35 Probe Set = Contig13242_at; Contig13243_s_at Unigene 35 Rice Locus = LOC_Os10g28600 Description for best rice BLAST hit to Unigene 35 member = PGR3, putative, expressed; E value = 1E-159 Marker name in barley Pilot OPA2 = 2_0011 Marker name in barley OPA2 = 12_20011 HarvEST Unigene 35 Probe Set = Contig13242_at, Contig13243_s_at Description for best rice BLAST hit to Unigene 35 member = protein PGR3, putative, expressed; E value = 1E-159 BLAST hit in the rice genome = PGR3, putative, expressed
Probe for Locus	HAR35_19469
Locus	POPA2_0011
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare