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GrainGenes Marker Report: POPA2_0012

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Locus	POPA2_0012
Type	SNP
Synonym	Other name 11_20012 BOPA1_10255-529 BOPA1_11_20012 Synonym 11_20012
Chromosome	4H
Chromosome Arm	4HS
Map	Barley, 2012 9KSNP 4H 43.3 Hordeum-OPA-2009-4H 39.76 Hordeum-OPA123-2008-4H 39.76 Hordeum-OPAConsensus-2011-4H 43.72
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_5236 i_11_20012
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0012 Marker name in barley OPA1 = 11_20012 Original SNP name = 10255-529 Most representative HarvEST:Barley Assembly #32 Unigene = 10255 Most representative HarvEST:Barley Assembly #35 Unigene = 5236 HarvEST Unigene 35 Probe Set = Contig12977_at Unigene 35 Rice Locus = LOC_Os03g52400 Description for best rice BLAST hit to Unigene 35 member = 50S ribosomal protein L12-2, chloroplast precursor, putative, expressed; E value = 1E-71 Marker name in barley Pilot OPA2 = 2_0012 Description for best rice BLAST hit to Unigene 35 member = protein 50S ribosomal protein L12-2, chloroplast precursor, putative, expressed; E value = 1E-71 BLAST hit in the rice genome = 50S ribosomal protein L12-2, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_5236
Locus	POPA2_0012
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare