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GrainGenes Marker Report: POPA2_0016

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Locus	POPA2_0016
Type	SNP
Synonym	Other name 12_20016 BOPA2_12_20016 Synonym 12_20016
Chromosome	7H
Chromosome Arm	7HS
Map	Barley, 2012 9KSNP 7H 0.6 Hordeum-OPA-2009-7H 0 Hordeum-OPA123-2008-7H 0 Hordeum-OPAConsensus-2011-7H 0
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_4230 i_12_20016
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 2_0016 Marker name in barley OPA1 = 12_20016 Original SNP name = 10308-451 Most representative HarvEST:Barley Assembly #32 Unigene = 10308 Most representative HarvEST:Barley Assembly #35 Unigene = 4230 HarvEST Unigene 35 Probe Set = Contig12634_at; HS07M18u_s_at Unigene 35 Rice Locus = LOC_Os09g39920 Description for best rice BLAST hit to Unigene 35 member = beta-1,4-mannan synthase, putative, expressed; E value = 0.000001 Marker name in barley Pilot OPA2 = 2_0016 Marker name in barley OPA2 = 12_20016 HarvEST Unigene 35 Probe Set = Contig12634_at, HS07M18u_s_at Description for best rice BLAST hit to Unigene 35 member = protein beta-1,4-mannan synthase, putative, expressed; E value = 0.000001 BLAST hit in the rice genome = beta-1,4-mannan synthase, putative, expressed
Probe for Locus	HAR35_4230
Locus	POPA2_0016
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare