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GrainGenes Marker Report: POPA2_0018

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Locus
POPA2_0018
Type
SNP
Synonym
Other name11_20018
BOPA1_10318-572
BOPA1_11_20018
Synonym11_20018
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H106.09
Hordeum-OPA123-2008-5H106.09
Hordeum-OPAConsensus-2011-5H93.66
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_19187
i_11_20018
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_0018
Marker name in barley OPA1 = 11_20018
Original SNP name = 10318-572
Most representative HarvEST:Barley Assembly #32 Unigene = 10318
Most representative HarvEST:Barley Assembly #35 Unigene = 19187
HarvEST Unigene 35 Probe Set = Contig13056_at
Unigene 35 Rice Locus = LOC_Os03g11370
Description for best rice BLAST hit to Unigene 35 member = auxin response factor 23, putative, expressed; E value = 5E-29
Marker name in barley Pilot OPA2 = 2_0018
Description for best rice BLAST hit to Unigene 35 member = protein auxin response factor 23, putative, expressed; E value = 5E-29
BLAST hit in the rice genome = auxin response factor 23, putative, expressed


Probe for Locus
HAR35_19187
Locus
POPA2_0018
POPA3_0962
POPA3_0961
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare