GrainGenes Marker Report: POPA2_0029
Locus
POPA2_0029
Type
SNP
Synonym
Other name 11_20029 BOPA1_10535-217 BOPA1_11_20029 Synonym 11_20029
Chromosome
6H
Chromosome Arm
6HL
Map
Barley, 2012 9KSNP 6H 116.1 Hordeum-OPA-2009-6H 123.19 Hordeum-OPA123-2008-6H 123.19 Hordeum-OPAConsensus-2011-6H 133.25
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_5524 i_11_20029
Reference
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0029 Marker name in barley OPA1 = 11_20029 Original SNP name = 10535-217 Most representative HarvEST:Barley Assembly #32 Unigene = 10535 Most representative HarvEST:Barley Assembly #35 Unigene = 5524 HarvEST Unigene 35 Probe Set = Contig15125_at Unigene 35 Rice Locus = LOC_Os02g57250 Description for best rice BLAST hit to Unigene 35 member = OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed; E value = 1E-88 Marker name in barley Pilot OPA2 = 2_0029 Description for best rice BLAST hit to Unigene 35 member = protein OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed; E value = 1E-88 BLAST hit in the rice genome = OsIAA10 - Auxin-responsive Aux/IAA gene family member, expressed
Probe for Locus
HAR35_5524
Locus
POPA2_0029 POPA1_0019
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0029
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