GrainGenes Marker Report: POPA2_0041
Locus
POPA2_0041
Type
SNP
Chromosome
7H
Chromosome Arm
7HL
Map
Barley-Core-2014_7H 117.1 Hordeum-OPA-2009-7H 116.95 Hordeum-OPA123-2008-7H 116.95 Hordeum-OPAConsensus-2011-7H 116.94
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_58
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0041 Most representative HarvEST:Barley Assembly #32 Unigene = 10756 Most representative HarvEST:Barley Assembly #35 Unigene = 58 HarvEST Unigene 35 Probe Set = Contig13415_at Unigene 35 Rice Locus = LOC_Os07g42450 Description for best rice BLAST hit to Unigene 35 member = 40S ribosomal protein SA, putative, expressed; E value = 5E-23 Marker name in barley Pilot OPA2 = 2_0041 Original SNP name = 10756-371 Original SNP name = U32_9614_416 Description for best rice BLAST hit to Unigene 35 member = protein 40S ribosomal protein SA, putative, expressed; E value = 5E-23 BLAST hit in the rice genome = 40S ribosomal protein SA, putative, expressed
Probe for Locus
HAR35_58
Locus
POPA2_0041
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0041
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