GrainGenes Marker Report: POPA2_0042
Locus
POPA2_0042
Type
SNP
Synonym
Other name 11_20042 BOPA1_10760-846 BOPA1_11_20042 Synonym 11_20042
Chromosome
7H
Chromosome Arm
7HL
Map
Barley, 2012 9KSNP 7H 77 Hordeum-OPA-2009-7H 86.44 Hordeum-OPA123-2008-7H 86.44 Hordeum-OPAConsensus-2011-7H 88.06
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_19986 i_11_20042
Reference
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0042 Marker name in barley OPA1 = 11_20042 Original SNP name = 10760-846 Most representative HarvEST:Barley Assembly #32 Unigene = 10760 Most representative HarvEST:Barley Assembly #35 Unigene = 19986 HarvEST Unigene 35 Probe Set = Contig13589_at Unigene 35 Rice Locus = LOC_Os06g37420 Description for best rice BLAST hit to Unigene 35 member = histone deacetylase 11, putative, expressed; E value = 1E-126 Marker name in barley Pilot OPA2 = 2_0042 Description for best rice BLAST hit to Unigene 35 member = protein histone deacetylase 11, putative, expressed; E value = 1E-126 BLAST hit in the rice genome = histone deacetylase 11, putative, expressed
Probe for Locus
HAR35_19986
Locus
POPA2_0042
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0042
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