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GrainGenes Marker Report: POPA2_0044

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Locus	POPA2_0044
Type	SNP
Synonym	Other name 11_20044 BOPA1_10780-204 BOPA1_11_20044 Synonym 11_20044
Chromosome	4H
Map	Hordeum-OPAConsensus-2011-4H 115.37
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_19527 i_11_20044
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0044 Marker name in barley OPA1 = 11_20044 Original SNP name = 10780-204 Most representative HarvEST:Barley Assembly #32 Unigene = 10780 Most representative HarvEST:Barley Assembly #35 Unigene = 19527 HarvEST Unigene 35 Probe Set = Contig13521_at; HS08I21u_s_at Unigene 35 Rice Locus = LOC_Os03g03420 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 9E-37 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_19527
Locus	POPA2_0044