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GrainGenes Marker Report: POPA2_0058

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Locus	POPA2_0058
Type	SNP
Synonym	Other name 11_20058 BOPA1_11016-603 BOPA1_11_20058 Synonym 11_20058
Chromosome	6H
Chromosome Arm	6HL
Map	Barley, 2012 9KSNP 6H 60.6 Hordeum-OPA-2009-6H 60.23 Hordeum-OPA123-2008-6H 60.23 Hordeum-OPAConsensus-2011-6H 65.83
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_6533 i_11_20058
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0058 Marker name in barley OPA1 = 11_20058 Original SNP name = 11016-603 Most representative HarvEST:Barley Assembly #32 Unigene = 11016 Most representative HarvEST:Barley Assembly #35 Unigene = 6533 HarvEST Unigene 35 Probe Set = Contig13620_at Unigene 35 Rice Locus = LOC_Os02g45054 Description for best rice BLAST hit to Unigene 35 member = INDETERMINATE-related protein 9, putative, expressed; E value = 1E-39 Marker name in barley Pilot OPA2 = 2_0058 Description for best rice BLAST hit to Unigene 35 member = protein INDETERMINATE-related protein 9, putative, expressed; E value = 1E-39 BLAST hit in the rice genome = INDETERMINATE-related protein 9, putative, expressed
Probe for Locus	HAR35_6533
Locus	POPA2_0058
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare