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GrainGenes Marker Report: POPA2_0062

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Locus	POPA2_0062
Type	SNP
Synonym	Other name 11_20062 BOPA1_1110-715 BOPA1_11_20062 Synonym 11_20062 bcd1735
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 65.05 Hordeum-OPA123-2008-4H 65.05 Hordeum-OPAConsensus-2011-4H 73.62 Hordeum-OWB-OPA2008-4H 63.31
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_14726 i_11_20062
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0062 Marker name in barley OPA1 = 11_20062 Original SNP name = 1110-715 Most representative HarvEST:Barley Assembly #32 Unigene = 1110 Most representative HarvEST:Barley Assembly #35 Unigene = 14726 HarvEST Unigene 35 Probe Set = HA03D07u_s_at; rbags1i23_s_at Unigene 35 Rice Locus = LOC_Os09g08430 Description for best rice BLAST hit to Unigene 35 member = 60S ribosomal protein L17, putative, expressed; E value = 6E-83 Marker name in barley Pilot OPA2 = 2_0062 HarvEST Unigene 35 Probe Set = HA03D07u_s_at, rbags1i23_s_at Description for best rice BLAST hit to Unigene 35 member = protein 60S ribosomal protein L17, putative, expressed; E value = 6E-83 BLAST hit in the rice genome = 60S ribosomal protein L17, putative, expressed
Probe for Locus	HAR35_14726
Locus	POPA2_0062 POPA1_0034
Synonym	Synonym BCD1735
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare