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GrainGenes Marker Report: POPA2_0064

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Locus	POPA2_0064
Type	SNP
Synonym	Other name 11_20064 BOPA1_111-499 BOPA1_11_20064 Synonym 11_20064
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 112.91 Hordeum-OPA123-2008-2H 112.91 Hordeum-OPAConsensus-2011-2H 124.98 Hordeum-OWB-OPA2008-2H 134.745
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_15624 i_11_20064
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0064 Marker name in barley OPA1 = 11_20064 Original SNP name = 111-499 Most representative HarvEST:Barley Assembly #32 Unigene = 111 Most representative HarvEST:Barley Assembly #35 Unigene = 15624 HarvEST Unigene 35 Probe Set = Contig143_at; Contig143_s_at Unigene 35 Rice Locus = LOC_Os08g09240 Description for best rice BLAST hit to Unigene 35 member = autophagy-related protein 8 precursor, putative, expressed; E value = 5E-59 Marker name in barley Pilot OPA2 = 2_0064 HarvEST Unigene 35 Probe Set = Contig143_at, Contig143_s_at Description for best rice BLAST hit to Unigene 35 member = protein autophagy-related protein 8 precursor, putative, expressed; E value = 5E-59 BLAST hit in the rice genome = autophagy-related protein 8 precursor, putative, expressed
Probe for Locus	HAR35_15624
Locus	POPA2_0064
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare