Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_0067

[Submit comment/correction]

Locus	POPA2_0067
Type	SNP
Chromosome	2H
Chromosome Arm	2HL
Map	Hordeum-OPA-2009-2H 63.53 Hordeum-OPA123-2008-2H 63.53
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_18226
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_0067 Most representative HarvEST:Barley Assembly #32 Unigene = 11220 Most representative HarvEST:Barley Assembly #35 Unigene = 18226 HarvEST Unigene 35 Probe Set = Contig13834_at Unigene 35 Rice Locus = LOC_Os04g33370 Description for best rice BLAST hit to Unigene 35 member = cytochrome P450 77A2, putative, expressed; E value = 1E-111 Marker name in barley Pilot OPA2 = 2_0067 Original SNP name = 11220-478 Description for best rice BLAST hit to Unigene 35 member = protein cytochrome P450 77A2, putative, expressed; E value = 1E-111 BLAST hit in the rice genome = cytochrome P450 77A2, putative, expressed
Probe for Locus	HAR35_18226
Locus	POPA1_0038 POPA2_0067
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare