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GrainGenes Marker Report: POPA2_0074

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Locus
POPA2_0074
Type
SNP
Synonym
Other name11_20074
BOPA1_11387-335
BOPA1_11_20074
Synonym11_20074
Chromosome
7H
Chromosome Arm
7HS
Map
Hordeum-OPA-2009-7H54.37
Hordeum-OPA123-2008-7H54.37
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_19940
i_11_20074
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_0074
Marker name in barley OPA1 = 11_20074
Original SNP name = 11387-335
Most representative HarvEST:Barley Assembly #32 Unigene = 11387
Most representative HarvEST:Barley Assembly #35 Unigene = 19940
HarvEST Unigene 35 Probe Set = Contig14426_at
Unigene 35 Rice Locus = LOC_Os09g25150
Description for best rice BLAST hit to Unigene 35 member = dihydroflavonol-4-reductase, putative, expressed; E value = 9E-54
Marker name in barley Pilot OPA2 = 2_0074
Original SNP name = U32_13967_126
Description for best rice BLAST hit to Unigene 35 member = protein dihydroflavonol-4-reductase, putative, expressed; E value = 9E-54
BLAST hit in the rice genome = dihydroflavonol-4-reductase, putative, expressed


Probe for Locus
HAR35_19940
Locus
POPA2_0074
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare