GrainGenes Marker Report: POPA2_0080
Locus
POPA2_0080
Type
SNP
Synonym
Other name 11_20080 BOPA1_11591-265 BOPA1_11_20080 Synonym 11_20080
Chromosome
2H
Chromosome Arm
2HL
Map
Barley, 2012 9KSNP 2H 88.5 Hordeum-OPA-2009-2H 95.64 Hordeum-OPA123-2008-2H 95.64 Hordeum-OPAConsensus-2011-2H 107.04
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_19588 i_11_20080
Reference
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0080 Marker name in barley OPA1 = 11_20080 Original SNP name = 11591-265 Most representative HarvEST:Barley Assembly #32 Unigene = 11591 Most representative HarvEST:Barley Assembly #35 Unigene = 19588 HarvEST Unigene 35 Probe Set = Contig15110_at Unigene 35 Rice Locus = LOC_Os03g22780 Description for best rice BLAST hit to Unigene 35 member = PCB2, putative, expressed; E value = 7E-88 Marker name in barley Pilot OPA2 = 2_0080 Description for best rice BLAST hit to Unigene 35 member = protein PCB2, putative, expressed; E value = 7E-88 BLAST hit in the rice genome = PCB2, putative, expressed
Probe for Locus
HAR35_19588
Locus
POPA2_0080
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0080
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