GrainGenes Marker Report: POPA2_0081
Locus
POPA2_0081
Type
SNP
Chromosome
5H
Chromosome Arm
5HL
Map
Barley-Core-2014_5H 135.42 Hordeum-OPA-2009-5H 151.36 Hordeum-OPA123-2008-5H 151.36 Hordeum-OPAConsensus-2011-5H 143.29
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_14540
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_0081 Most representative HarvEST:Barley Assembly #32 Unigene = 1159 Most representative HarvEST:Barley Assembly #35 Unigene = 14540 HarvEST Unigene 35 Probe Set = Contig1718_s_at Unigene 35 Rice Locus = LOC_Os11g26760 Description for best rice BLAST hit to Unigene 35 member = dehydrin Rab16C, putative, expressed; E value = 2E-45 Marker name in barley Pilot OPA2 = 2_0081 Original SNP name = 1159-588 Description for best rice BLAST hit to Unigene 35 member = protein dehydrin Rab16C, putative, expressed; E value = 2E-45 BLAST hit in the rice genome = dehydrin Rab16C, putative, expressed
Probe for Locus
HAR35_14540
Locus
POPA3_1050 POPA2_0081
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0081
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