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GrainGenes Marker Report: POPA2_0096

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Locus	POPA2_0096
Type	SNP
Synonym	Other name 11_20096 BOPA1_11931-389 BOPA1_11_20096 Synonym 11_20096
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 84.51 Hordeum-OPA123-2008-5H 84.51 Hordeum-OPAConsensus-2011-5H 70.9 Hordeum-OWB-OPA2008-5H 94.974
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_20660 i_11_20096
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0096 Marker name in barley OPA1 = 11_20096 Original SNP name = 11931-389 Most representative HarvEST:Barley Assembly #32 Unigene = 11931 Most representative HarvEST:Barley Assembly #35 Unigene = 20660 HarvEST Unigene 35 Probe Set = Contig14645_at; Contig14646_s_at Unigene 35 Rice Locus = LOC_Os09g27610 Description for best rice BLAST hit to Unigene 35 member = conserved hypothetical protein; E value = 4E-36 Marker name in barley Pilot OPA2 = 2_0096 HarvEST Unigene 35 Probe Set = Contig14645_at, Contig14646_s_at Description for best rice BLAST hit to Unigene 35 member = protein conserved hypothetical protein; E value = 4E-36 BLAST hit in the rice genome = conserved hypothetical protein
Probe for Locus	HAR35_20660
Locus	POPA2_0096
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare