Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_0103

[Submit comment/correction]

Locus	POPA2_0103
Type	SNP
Synonym	Other name 11_20103 BOPA1_11_20103 BOPA1_12027-128 Synonym 11_20103
Chromosome	7H
Chromosome Arm	7HL
Map	Barley, 2012 9KSNP 7H 91.9 Hordeum-OPA-2009-7H 102.85 Hordeum-OPA123-2008-7H 102.85 Hordeum-OPAConsensus-2011-7H 104.32 Hordeum-OWB-OPA2008-7H 114.616
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_7136 i_11_20103
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0103 Marker name in barley OPA1 = 11_20103 Original SNP name = 12027-128 Most representative HarvEST:Barley Assembly #32 Unigene = 12027 Most representative HarvEST:Barley Assembly #35 Unigene = 7136 HarvEST Unigene 35 Probe Set = Contig15181_at Unigene 35 Rice Locus = LOC_Os06g48600 Description for best rice BLAST hit to Unigene 35 member = macrophage migration inhibitory factor, putative, expressed; E value = 4E-51 Marker name in barley Pilot OPA2 = 2_0103 Description for best rice BLAST hit to Unigene 35 member = protein macrophage migration inhibitory factor, putative, expressed; E value = 4E-51 BLAST hit in the rice genome = macrophage migration inhibitory factor, putative, expressed
Probe for Locus	HAR35_7136
Locus	POPA2_0103
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare