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GrainGenes Marker Report: POPA2_0116

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Locus	POPA2_0116
Type	SNP
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 73.04 Hordeum-OPA123-2008-3H 73.04
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_6293
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_0116 Most representative HarvEST:Barley Assembly #32 Unigene = 12283 Most representative HarvEST:Barley Assembly #35 Unigene = 6293 HarvEST Unigene 35 Probe Set = Unigene 35 Rice Locus = LOC_Os01g54580 Description for best rice BLAST hit to Unigene 35 member = solute carrier family 35 member C2, putative, expressed; E value = 1E-110 Marker name in barley Pilot OPA2 = 2_0116 Original SNP name = 12283-143 Description for best rice BLAST hit to Unigene 35 member = protein solute carrier family 35 member C2, putative, expressed; E value = 1E-110 BLAST hit in the rice genome = solute carrier family 35 member C2, putative, expressed
Probe for Locus	HAR35_6293
Locus	POPA2_0116
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare