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GrainGenes Marker Report: POPA2_0120

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Locus	POPA2_0120
Type	SNP
Chromosome	1H
Chromosome Arm	1HL
Map	Barley-Core-2014_1H 71.44 Hordeum-OPA-2009-1H 71.43 Hordeum-OPA123-2008-1H 71.43 Hordeum-OPAConsensus-2011-1H 74.81
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_13849
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_0120 Most representative HarvEST:Barley Assembly #32 Unigene = 1245 Most representative HarvEST:Barley Assembly #35 Unigene = 13849 HarvEST Unigene 35 Probe Set = Contig25242_at Unigene 35 Rice Locus = LOC_Os05g41990 Description for best rice BLAST hit to Unigene 35 member = peroxidase 1 precursor, putative, expressed; E value = 1E-151 Marker name in barley Pilot OPA2 = 2_0120 Original SNP name = 1245-164 Description for best rice BLAST hit to Unigene 35 member = protein peroxidase 1 precursor, putative, expressed; E value = 1E-151 BLAST hit in the rice genome = peroxidase 1 precursor, putative, expressed
Probe for Locus	HAR35_13849
Locus	POPA2_0120
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare