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GrainGenes Marker Report: POPA2_0129

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Locus	POPA2_0129
Type	SNP
Synonym	Other name 11_20129 BOPA1_11_20129 BOPA1_1286-990 Synonym 11_20129
Chromosome	5H
Chromosome Arm	5HS
Map	Barley, 2012 9KSNP 5H 44.2 Hordeum-OPA-2009-5H 51 Hordeum-OPA123-2008-5H 51 Hordeum-OPAConsensus-2011-5H 42.41
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_14690 i_11_20129
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 2_0129 Marker name in barley OPA1 = 11_20129 Original SNP name = 1286-990 Most representative HarvEST:Barley Assembly #32 Unigene = 1286 Most representative HarvEST:Barley Assembly #35 Unigene = 14690 HarvEST Unigene 35 Probe Set = Contig1906_at; Contig1907_s_at Unigene 35 Rice Locus = LOC_Os12g36180 Description for best rice BLAST hit to Unigene 35 member = auxilin-like protein, putative, expressed; E value = 1E-137 Marker name in barley Pilot OPA2 = 2_0129 Original SNP name = U35_21473_455 HarvEST Unigene 35 Probe Set = Contig1906_at, Contig1907_s_at Description for best rice BLAST hit to Unigene 35 member = protein auxilin-like protein, putative, expressed; E value = 1E-137 BLAST hit in the rice genome = auxilin-like protein, putative, expressed
Probe for Locus	HAR35_14690
Locus	POPA2_0129
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare