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GrainGenes Marker Report: POPA2_0131

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Locus	POPA2_0131
Type	SNP
Synonym	Other name 11_20131 BOPA1_11_20131 BOPA1_1292-406 Synonym 11_20131
Chromosome	2H
Map	Hordeum-OPAConsensus-2011-2H 54.27
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_465 i_11_20131
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0131 Marker name in barley OPA1 = 11_20131 Original SNP name = 1292-406 Most representative HarvEST:Barley Assembly #32 Unigene = 1292 Most representative HarvEST:Barley Assembly #35 Unigene = 465 HarvEST Unigene 35 Probe Set = Contig1919_at Unigene 35 Rice Locus = LOC_Os07g42450 Description for best rice BLAST hit to Unigene 35 member = 40S ribosomal protein SA, putative, expressed; E value = 1E-153 BLAST hit in the rice genome = 40S ribosomal protein SA, putative, expressed
Probe for Locus	HAR35_465
Locus	POPA2_0131