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GrainGenes Marker Report: POPA2_0135

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Locus	POPA2_0135
Type	SNP
Synonym	Other name 11_20135 BOPA1_11_20135 BOPA1_1304-478 Synonym 11_20135
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPAConsensus-2011-4H 63.79
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_14768 i_11_20135
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0135 Marker name in barley OPA1 = 11_20135 Original SNP name = 1304-478 Most representative HarvEST:Barley Assembly #32 Unigene = 1304 Most representative HarvEST:Barley Assembly #35 Unigene = 14768 HarvEST Unigene 35 Probe Set = Contig1937_at; HVSMEa0006A05r2_s_at Unigene 35 Rice Locus = LOC_Os12g33240 Description for best rice BLAST hit to Unigene 35 member = mitochondrial ribosomal protein S10, putative, expressed; E value = 6E-38 BLAST hit in the rice genome = mitochondrial ribosomal protein S10, putative, expressed
Probe for Locus	HAR35_14768
Locus	POPA2_0135
Synonym	Synonym psr100 PSR100
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare