Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_0139

[Submit comment/correction]

Locus	POPA2_0139
Type	SNP
Synonym	Other name 11_20139 BOPA1_11_20139 BOPA1_13108-412 Synonym 11_20139
Chromosome	7H
Chromosome Arm	7HL
Map	Barley, 2012 9KSNP 7H 128.3 Hordeum-OPA-2009-7H 141.76 Hordeum-OPA123-2008-7H 141.76 Hordeum-OPAConsensus-2011-7H 141.15
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_22152 i_11_20139
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0139 Marker name in barley OPA1 = 11_20139 Original SNP name = 13108-412 Most representative HarvEST:Barley Assembly #32 Unigene = 13108 Most representative HarvEST:Barley Assembly #35 Unigene = 22152 HarvEST Unigene 35 Probe Set = Contig15392_at Unigene 35 Rice Locus = LOC_Os01g44230 Description for best rice BLAST hit to Unigene 35 member = transcription factor X1, putative, expressed; E value = 6E-20 Marker name in barley Pilot OPA2 = 2_0139 Description for best rice BLAST hit to Unigene 35 member = protein transcription factor X1, putative, expressed; E value = 6E-20 BLAST hit in the rice genome = transcription factor X1, putative, expressed
Probe for Locus	HAR35_22152
Locus	POPA2_0139
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare