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GrainGenes Marker Report: POPA2_0151

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Locus	POPA2_0151
Type	SNP
Synonym	Synonym 11_20151
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 59.37 Hordeum-OPA123-2008-4H 59.37 Hordeum-OWB-OPA2008-4H 58.938
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_14859
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0151 Marker name in barley OPA1 = 11_20151 Original SNP name = 1351-790 Most representative HarvEST:Barley Assembly #32 Unigene = 1351 Most representative HarvEST:Barley Assembly #35 Unigene = 14859 HarvEST Unigene 35 Probe Set = HB18H23r_s_at Unigene 35 Rice Locus = LOC_Os03g15960 Description for best rice BLAST hit to Unigene 35 member = 17.4 kDa class I heat shock protein 3, putative, expressed; E value = 2E-75 Marker name in barley Pilot OPA2 = 2_0151 Description for best rice BLAST hit to Unigene 35 member = protein 17.4 kDa class I heat shock protein 3, putative, expressed; E value = 2E-75 BLAST hit in the rice genome = 17.4 kDa class I heat shock protein 3, putative, expressed
Probe for Locus	HAR35_14859
Locus	POPA2_0151 POPA1_0086
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare