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GrainGenes Marker Report: POPA2_0153

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Locus	POPA2_0153
Type	SNP
Synonym	Other name 11_20153 BOPA1_11_20153 BOPA1_13589-175 Synonym 11_20153
Chromosome	1H
Map	Hordeum-OPAConsensus-2011-1H 105.77
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_22319 i_11_20153
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0153 Marker name in barley OPA1 = 11_20153 Original SNP name = 13589-175 Most representative HarvEST:Barley Assembly #32 Unigene = 13589 Most representative HarvEST:Barley Assembly #35 Unigene = 22319 HarvEST Unigene 35 Probe Set = Contig16067_at Unigene 35 Rice Locus = LOC_Os05g43670 Description for best rice BLAST hit to Unigene 35 member = IQ calmodulin-binding motif family protein, expressed; E value = 2E-23 BLAST hit in the rice genome = IQ calmodulin-binding motif family protein, expressed
Probe for Locus	HAR35_22319
Locus	POPA2_0153