GrainGenes Marker Report: POPA2_0161
Locus
POPA2_0161
Type
SNP
Chromosome
2H
Chromosome Arm
2HS
Map
Barley-Core-2014_2H 16.17 Hordeum-OPA-2009-2H 10.06 Hordeum-OPA123-2008-2H 10.06 Hordeum-OPAConsensus-2011-2H 10.86
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_8359
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0161 Most representative HarvEST:Barley Assembly #32 Unigene = 14041 Most representative HarvEST:Barley Assembly #35 Unigene = 8359 HarvEST Unigene 35 Probe Set = Contig17779_at Unigene 35 Rice Locus = LOC_Os07g38250 Description for best rice BLAST hit to Unigene 35 member = protein kinase, putative, expressed; E value = 2E-25 Marker name in barley Pilot OPA2 = 2_0161 Original SNP name = 14041-135 Original SNP name = U32_1824_1338 Description for best rice BLAST hit to Unigene 35 member = protein protein kinase, putative, expressed; E value = 2E-25 BLAST hit in the rice genome = protein kinase, putative, expressed
Probe for Locus
HAR35_8359
Locus
POPA1_0096 POPA2_0161
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0161
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