GrainGenes Marker Report: POPA2_0165
Locus
POPA2_0165
Type
SNP
Chromosome
7H
Chromosome Arm
7HS
Map
Barley-Core-2014_7H 50.84 Hordeum-OPA-2009-7H 46.87 Hordeum-OPA123-2008-7H 46.87 Hordeum-OPAConsensus-2011-7H 39.7
[ Show Nearby Loci ]
QTL with Locus Marker
MQTL_Du2024.yield-7H.4
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_14811
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_0165 Most representative HarvEST:Barley Assembly #32 Unigene = 1423 Most representative HarvEST:Barley Assembly #35 Unigene = 14811 HarvEST Unigene 35 Probe Set = Contig253_s_at Unigene 35 Rice Locus = LOC_Os06g07580 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 4E-29 Marker name in barley Pilot OPA2 = 2_0165 Original SNP name = 1423-389 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 4E-29 BLAST hit in the rice genome = expressed protein
Probe for Locus
HAR35_14811
Locus
POPA2_0165
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0165
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