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GrainGenes Marker Report: POPA2_0170

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Locus
POPA2_0170
Type
SNP
Synonym
Other name11_20170
BOPA1_11_20170
BOPA1_1437-687
Synonym11_20170
Chromosome
7H
Chromosome Arm
7HL
Map
Hordeum-OPA-2009-7H161.54
Hordeum-OPA123-2008-7H161.54
Hordeum-OPAConsensus-2011-7H162.45
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_673
i_11_20170
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 2_0170
Marker name in barley OPA1 = 11_20170
Original SNP name = 1437-687
Most representative HarvEST:Barley Assembly #32 Unigene = 1437
Most representative HarvEST:Barley Assembly #35 Unigene = 673
HarvEST Unigene 35 Probe Set = HVSMEb0009E07r2_s_at; HVSMEc0003N15r2_s_at
Unigene 35 Rice Locus = LOC_Os06g51029
Description for best rice BLAST hit to Unigene 35 member = OsFtsH1 - Oryza sativa FtsH protease, homologue of AtFtsH1/5, expressed; E value = 0
Marker name in barley Pilot OPA2 = 2_0170
HarvEST Unigene 35 Probe Set = HVSMEb0009E07r2_s_at, HVSMEc0003N15r2_s_at
Description for best rice BLAST hit to Unigene 35 member = protein OsFtsH1 - Oryza sativa FtsH protease, homologue of AtFtsH1/5, expressed; E value = 0
BLAST hit in the rice genome = OsFtsH1 - Oryza sativa FtsH protease, homologue of AtFtsH1/5, expressed


Probe for Locus
HAR35_673
Locus
POPA2_0170
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare