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GrainGenes Marker Report: POPA2_0174

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Locus	POPA2_0174
Type	SNP
Chromosome	3H
Chromosome Arm	3HL
Map	Barley-Core-2014_3H 111.27 Hordeum-OPA-2009-3H 124.84 Hordeum-OPA123-2008-3H 124.84 Hordeum-OPAConsensus-2011-3H 132.62
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_7543
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_0174 Most representative HarvEST:Barley Assembly #32 Unigene = 14486 Most representative HarvEST:Barley Assembly #35 Unigene = 7543 HarvEST Unigene 35 Probe Set = Unigene 35 Rice Locus = LOC_Os01g66720 Description for best rice BLAST hit to Unigene 35 member = NADP-dependent oxidoreductase P1, putative, expressed; E value = 2E-85 Marker name in barley Pilot OPA2 = 2_0174 Original SNP name = 14486-68 Description for best rice BLAST hit to Unigene 35 member = protein NADP-dependent oxidoreductase P1, putative, expressed; E value = 2E-85 BLAST hit in the rice genome = NADP-dependent oxidoreductase P1, putative, expressed
Probe for Locus	HAR35_7543
Locus	POPA2_0174
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare