GrainGenes Marker Report: POPA2_0175
Locus
POPA2_0175
Type
SNP
Chromosome
3H
Chromosome Arm
3HS
Map
Barley-Core-2014_3H 5.39 Hordeum-OPA-2009-3H 2.29 Hordeum-OPA123-2008-3H 2.29 Hordeum-OPAConsensus-2011-3H 5.36
[ Show Nearby Loci ]
QTL with Locus Marker
MQTL_Du2024.yield-3H.1
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_14930
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 2_0175 Most representative HarvEST:Barley Assembly #32 Unigene = 1453 Most representative HarvEST:Barley Assembly #35 Unigene = 14930 HarvEST Unigene 35 Probe Set = Contig2103_at Unigene 35 Rice Locus = LOC_Os09g31180 Description for best rice BLAST hit to Unigene 35 member = 60S ribosomal protein L9, putative, expressed; E value = 1E-91 Marker name in barley Pilot OPA2 = 2_0175 Original SNP name = 1453-81 Description for best rice BLAST hit to Unigene 35 member = protein 60S ribosomal protein L9, putative, expressed; E value = 1E-91 BLAST hit in the rice genome = 60S ribosomal protein L9, putative, expressed
Probe for Locus
HAR35_14930
Locus
POPA1_0103 POPA2_0175
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0175
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