Query (optional)   in Class  

GrainGenes Marker Report: POPA2_0176

[Submit comment/correction]

Locus
POPA2_0176
Type
SNP
Synonym
Other name12_20176
BOPA2_12_20176
Synonym12_20176
Chromosome
3H
Chromosome Arm
3HL
Map
Hordeum-OPA-2009-3H170.09
Hordeum-OPA123-2008-3H170.09
Hordeum-OPAConsensus-2011-3H175.7
Hordeum-OWB-OPA2008-3H202.557
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Probe
HAR35_23269
i_12_20176
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 2_0176
Marker name in barley OPA1 = 12_20176
Original SNP name = 14538-224
Most representative HarvEST:Barley Assembly #32 Unigene = 14538
Most representative HarvEST:Barley Assembly #35 Unigene = 23269
HarvEST Unigene 35 Probe Set = Contig18418_at; Contig18418_s_at
Unigene 35 Rice Locus =
Description for best rice BLAST hit to Unigene 35 member = ; E value =
Marker name in barley Pilot OPA2 = 2_0176
Marker name in barley OPA2 = 12_20176
Original SNP name = ABC14673_1_118
HarvEST Unigene 35 Probe Set = Contig18418_at, Contig18418_s_at


Probe for Locus
HAR35_23269
Locus
POPA2_0176
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare