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GrainGenes Marker Report: POPA2_0178

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Locus	POPA2_0178
Type	SNP
Synonym	Other name 11_20178 BOPA1_11_20178 BOPA1_14644-498 Synonym 11_20178
Chromosome	4H
Chromosome Arm	4HL
Map	Barley, 2012 9KSNP 4H 83.6 Hordeum-OPA-2009-4H 86.27 Hordeum-OPA123-2008-4H 86.27 Hordeum-OPAConsensus-2011-4H 95.22
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_6990 i_11_20178
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0178 Marker name in barley OPA1 = 11_20178 Original SNP name = 14644-498 Most representative HarvEST:Barley Assembly #32 Unigene = 14644 Most representative HarvEST:Barley Assembly #35 Unigene = 6990 HarvEST Unigene 35 Probe Set = Contig18021_at Unigene 35 Rice Locus = LOC_Os03g08140 Description for best rice BLAST hit to Unigene 35 member = tubulin--tyrosine ligase-like protein 12, putative, expressed; E value = 9E-76 Marker name in barley Pilot OPA2 = 2_0178 Description for best rice BLAST hit to Unigene 35 member = protein tubulin--tyrosine ligase-like protein 12, putative, expressed; E value = 9E-76 BLAST hit in the rice genome = tubulin--tyrosine ligase-like protein 12, putative, expressed
Probe for Locus	HAR35_6990
Locus	POPA2_0178
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare