GrainGenes Marker Report: POPA2_0194
Locus
POPA2_0194
Type
SNP
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H 159.79 Hordeum-OPA123-2008-5H 159.79
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe
HAR35_145
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0194 Most representative HarvEST:Barley Assembly #32 Unigene = 151 Most representative HarvEST:Barley Assembly #35 Unigene = 145 HarvEST Unigene 35 Probe Set = EBro02_SQ008_N01_s_at Unigene 35 Rice Locus = LOC_Os05g47810 Description for best rice BLAST hit to Unigene 35 member = UL36 very large tegument protein, putative, expressed; E value = 0.00006 Marker name in barley Pilot OPA2 = 2_0194 Original SNP name = 151-415 Original SNP name = U32_8565_505 Description for best rice BLAST hit to Unigene 35 member = protein UL36 very large tegument protein, putative, expressed; E value = 0.00006 BLAST hit in the rice genome = UL36 very large tegument protein, putative, expressed
Probe for Locus
HAR35_145
Locus
POPA1_0115 POPA2_0194
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0194
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
| ||||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
| |||||||||||||
|
|