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GrainGenes Marker Report: POPA2_0214

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Locus	POPA2_0214
Type	SNP
Chromosome	6H
Chromosome Arm	6HS
Map	Hordeum-OPA-2009-6H 1.34 Hordeum-OPA123-2008-6H 1.34
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_929
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0214 Most representative HarvEST:Barley Assembly #32 Unigene = 1604 Most representative HarvEST:Barley Assembly #35 Unigene = 929 HarvEST Unigene 35 Probe Set = Contig2379_s_at; Contig2399_at Unigene 35 Rice Locus = LOC_Os09g07570 Description for best rice BLAST hit to Unigene 35 member = ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed; E value = 2E-65 Marker name in barley Pilot OPA2 = 2_0214 Original SNP name = 1604-675 HarvEST Unigene 35 Probe Set = Contig2379_s_at, Contig2399_at Description for best rice BLAST hit to Unigene 35 member = protein ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed; E value = 2E-65 BLAST hit in the rice genome = ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_929
Locus	POPA2_0214
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare