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GrainGenes Marker Report: POPA2_0225

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Locus	POPA2_0225
Type	SNP
Synonym	Other name 11_20225 BOPA1_11_20225 BOPA1_1660-347 Synonym 11_20225
Chromosome	7H
Chromosome Arm	7HS
Map	Barley, 2012 9KSNP 7H 12.7 Hordeum-OPAConsensus-2011-7H 9.73
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_551 i_11_20225
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 2_0225 Marker name in barley OPA1 = 11_20225 Original SNP name = 1660-347 Most representative HarvEST:Barley Assembly #32 Unigene = 1660 Most representative HarvEST:Barley Assembly #35 Unigene = 551 HarvEST Unigene 35 Probe Set = Contig2433_s_at Unigene 35 Rice Locus = LOC_Os05g10210 Description for best rice BLAST hit to Unigene 35 member = stem 28 kDa glycoprotein precursor, putative, expressed; E value = 1E-72 BLAST hit in the rice genome = stem 28 kDa glycoprotein precursor, putative, expressed
Probe for Locus	HAR35_551
Locus	POPA2_0225 POPA2_0227
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare