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GrainGenes Marker Report: POPA2_0232

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Locus	POPA2_0232
Type	SNP
Synonym	Other name 11_20232 [ Show all 6 ]
Chromosome	6H
Chromosome Arm	6HS
Map	Barley, 2012 9KSNP 6H 0 [ Show all 6 ]
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP [ Show all 6 ]
Species	Hordeum vulgare
Probe	HAR35_811 i_11_20232
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0232 Marker name in barley OPA1 = 11_20232 Original SNP name = 1692-742 Most representative HarvEST:Barley Assembly #32 Unigene = 1692 Most representative HarvEST:Barley Assembly #35 Unigene = 811 HarvEST Unigene 35 Probe Set = Contig2515_at Unigene 35 Rice Locus = LOC_Os02g01150 Description for best rice BLAST hit to Unigene 35 member = hydroxypyruvate reductase, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0232 Original SNP name = U32_1058_914 Description for best rice BLAST hit to Unigene 35 member = protein hydroxypyruvate reductase, putative, expressed; E value = 0 BLAST hit in the rice genome = hydroxypyruvate reductase, putative, expressed
Probe for Locus	HAR35_811
Locus	POPA2_0232
Synonym	Synonym ABG462 cMWG679 PSR167 psr167
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare