Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_0234

[Submit comment/correction]

Locus	POPA2_0234
Type	SNP
Synonym	Synonym 12_20234
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 54.95 Hordeum-OPA123-2008-2H 54.95 Hordeum-OWB-OPA2008-2H 70.578
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_769
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0234 Marker name in barley OPA1 = 12_20234 Original SNP name = 1698-676 Most representative HarvEST:Barley Assembly #32 Unigene = 1698 Most representative HarvEST:Barley Assembly #35 Unigene = 769 HarvEST Unigene 35 Probe Set = Contig2352_at Unigene 35 Rice Locus = LOC_Os03g29460 Description for best rice BLAST hit to Unigene 35 member = 60S ribosomal protein L27a-3, putative, expressed; E value = 5E-73 Marker name in barley Pilot OPA2 = 2_0234 Marker name in barley OPA2 = 12_20234 Description for best rice BLAST hit to Unigene 35 member = protein 60S ribosomal protein L27a-3, putative, expressed; E value = 5E-73 BLAST hit in the rice genome = 60S ribosomal protein L27a-3, putative, expressed
Probe for Locus	HAR35_769
Locus	POPA1_0147 POPA2_0234
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare