GrainGenes Marker Report: POPA2_0238
Locus
POPA2_0238
Type
SNP
Chromosome
1H
Chromosome Arm
1HS
Map
Barley-Core-2014_1H 5.22 Hordeum-OPA-2009-1H 3.75 Hordeum-OPA123-2008-1H 3.75 Hordeum-OPAConsensus-2011-1H 4.71
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe
HAR35_14915
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0238 Most representative HarvEST:Barley Assembly #32 Unigene = 1714 Most representative HarvEST:Barley Assembly #35 Unigene = 14915 HarvEST Unigene 35 Probe Set = Contig2537_at Unigene 35 Rice Locus = LOC_Os05g01490 Description for best rice BLAST hit to Unigene 35 member = GTP-binding protein YPTM1, putative, expressed; E value = 1E-102 Marker name in barley Pilot OPA2 = 2_0238 Original SNP name = 1714-364 Original SNP name = U35_16501_168 Description for best rice BLAST hit to Unigene 35 member = protein GTP-binding protein YPTM1, putative, expressed; E value = 1E-102 BLAST hit in the rice genome = GTP-binding protein YPTM1, putative, expressed
Probe for Locus
HAR35_14915
Locus
POPA2_0238
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA2_0238
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