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GrainGenes Marker Report: POPA2_0240

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Locus	POPA2_0240
Type	SNP
Synonym	Other name 12_20240 BOPA2_12_20240 Synonym 12_20240 BCD1643 BCD2026
Chromosome	4H
Chromosome Arm	4HS
Map	Barley, 2012 9KSNP 4H 43.6 Hordeum-OPA-2009-4H 40.36 Hordeum-OPA123-2008-4H 40.36 Hordeum-OPAConsensus-2011-4H 44.99 Hordeum-OWB-OPA2008-4H 41.201
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_696 i_12_20240
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 2_0240 Marker name in barley OPA1 = 12_20240 Original SNP name = 1751-296 Most representative HarvEST:Barley Assembly #32 Unigene = 1751 Most representative HarvEST:Barley Assembly #35 Unigene = 696 HarvEST Unigene 35 Probe Set = Contig2592_at; Contig2594_s_at Unigene 35 Rice Locus = LOC_Os03g52690 Description for best rice BLAST hit to Unigene 35 member = CBS domain protein, putative, expressed; E value = 1E-101 Marker name in barley Pilot OPA2 = 2_0240 Marker name in barley OPA2 = 12_20240 HarvEST Unigene 35 Probe Set = Contig2592_at, Contig2594_s_at Description for best rice BLAST hit to Unigene 35 member = protein CBS domain protein, putative, expressed; E value = 1E-101 BLAST hit in the rice genome = CBS domain protein, putative, expressed
Probe for Locus	HAR35_696
Locus	POPA2_0240 POPA1_0160
Synonym	Synonym BCD1643 BCD2026
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare