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GrainGenes Marker Report: POPA2_0241

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Locus	POPA2_0241
Type	SNP
Synonym	Other name 12_20241 BOPA2_12_20241 Synonym 12_20241
Chromosome	7H
Chromosome Arm	7HL
Map	Barley, 2012 9KSNP 7H 131 Hordeum-OPA-2009-7H 143.68 Hordeum-OPA123-2008-7H 143.68 Hordeum-OPAConsensus-2011-7H 142.46
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15205 i_12_20241
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0241 Marker name in barley OPA1 = 12_20241 Original SNP name = 1754-505 Most representative HarvEST:Barley Assembly #32 Unigene = 1754 Most representative HarvEST:Barley Assembly #35 Unigene = 15205 HarvEST Unigene 35 Probe Set = Contig2577_s_at; HVSMEl0006A12r2_s_at Unigene 35 Rice Locus = Description for best rice BLAST hit to Unigene 35 member = ; E value = Marker name in barley Pilot OPA2 = 2_0241 Marker name in barley OPA2 = 12_20241 Original SNP name = U35_6155_393 HarvEST Unigene 35 Probe Set = Contig2577_s_at, HVSMEl0006A12r2_s_at
Probe for Locus	HAR35_15205
Locus	POPA2_0241
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare