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GrainGenes Marker Report: POPA2_0245

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Locus	POPA2_0245
Type	SNP
Synonym	Other name 11_20245 BOPA1_11_20245 BOPA1_1773-358 Synonym 11_20245
Chromosome	7H
Chromosome Arm	7HS
Map	Barley, 2012 9KSNP 7H 9.8 Hordeum-OPA-2009-7H 12.42 Hordeum-OPA123-2008-7H 12.42 Hordeum-OPAConsensus-2011-7H 7.87
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_814 i_11_20245
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 2_0245 Marker name in barley OPA1 = 11_20245 Original SNP name = 1773-358 Most representative HarvEST:Barley Assembly #32 Unigene = 1773 Most representative HarvEST:Barley Assembly #35 Unigene = 814 HarvEST Unigene 35 Probe Set = Contig2657_at; HA30K22r_s_at Unigene 35 Rice Locus = LOC_Os06g03486 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-23 Marker name in barley Pilot OPA2 = 2_0245 Original SNP name = U35_5079_499 HarvEST Unigene 35 Probe Set = Contig2657_at, HA30K22r_s_at Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-23 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_814
Locus	POPA2_0245
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare