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GrainGenes Marker Report: POPA2_0249

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Locus	POPA2_0249
Type	SNP
Synonym	Synonym 11_20249
Chromosome	7H
Chromosome Arm	7HS
Map	Hordeum-OPA-2009-7H 52.82 Hordeum-OPA123-2008-7H 52.82 Hordeum-OPAConsensus-2011-7H 44.12
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_838
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0249 Marker name in barley OPA1 = 11_20249 Original SNP name = 1792-372 Most representative HarvEST:Barley Assembly #32 Unigene = 1792 Most representative HarvEST:Barley Assembly #35 Unigene = 838 HarvEST Unigene 35 Probe Set = Unigene 35 Rice Locus = LOC_Os02g55390 Description for best rice BLAST hit to Unigene 35 member = 60S ribosomal protein L39, putative, expressed; E value = 2E-24 Marker name in barley Pilot OPA2 = 2_0249 Description for best rice BLAST hit to Unigene 35 member = protein 60S ribosomal protein L39, putative, expressed; E value = 2E-24 BLAST hit in the rice genome = 60S ribosomal protein L39, putative, expressed
Probe for Locus	HAR35_838
Locus	POPA2_0249
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare