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GrainGenes Marker Report: POPA2_0259

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Locus	POPA2_0259
Type	SNP
Synonym	Other name 11_20259 BOPA1_11_20259 BOPA1_1863-275 Synonym 11_20259
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 122.4 Hordeum-OPA-2009-5H 132.63 Hordeum-OPA123-2008-5H 132.63 Hordeum-OPAConsensus-2011-5H 125.09
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_13732 i_11_20259
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 2_0259 Marker name in barley OPA1 = 11_20259 Original SNP name = 1863-275 Most representative HarvEST:Barley Assembly #32 Unigene = 1863 Most representative HarvEST:Barley Assembly #35 Unigene = 13732 HarvEST Unigene 35 Probe Set = Contig2776_at; HD04M06r_at; HT11A06u_s_at Unigene 35 Rice Locus = LOC_Os03g53230 Description for best rice BLAST hit to Unigene 35 member = bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0259 HarvEST Unigene 35 Probe Set = Contig2776_at, HD04M06r_at, HT11A06u_s_at Description for best rice BLAST hit to Unigene 35 member = protein bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed; E value = 0 BLAST hit in the rice genome = bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed
Probe for Locus	HAR35_13732
Locus	POPA2_0259 POPA1_0179
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare