Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA2_0261

[Submit comment/correction]

Locus	POPA2_0261
Type	SNP
Chromosome	2H
Chromosome Arm	2HS
Map	Hordeum-OPA-2009-2H 10.06 Hordeum-OPA123-2008-2H 10.06
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_15221
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0261 Most representative HarvEST:Barley Assembly #32 Unigene = 1870 Most representative HarvEST:Barley Assembly #35 Unigene = 15221 HarvEST Unigene 35 Probe Set = rbags36a18_s_at Unigene 35 Rice Locus = LOC_Os12g17910 Description for best rice BLAST hit to Unigene 35 member = ruBisCO large subunit-binding protein subunit alpha, chloroplast precursor, putative, expressed; E value = 0 Marker name in barley Pilot OPA2 = 2_0261 Original SNP name = 1870-1887 Original SNP name = U35_6429_534 Description for best rice BLAST hit to Unigene 35 member = protein ruBisCO large subunit-binding protein subunit alpha, chloroplast precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = ruBisCO large subunit-binding protein subunit alpha, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_15221
Locus	POPA2_0261
Synonym	Synonym cMWG655
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare