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GrainGenes Marker Report: POPA2_0263

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Locus	POPA2_0263
Type	SNP
Chromosome	5H
Chromosome Arm	5HS
Map	Hordeum-OPA-2009-5H 25.23 Hordeum-OPA123-2008-5H 25.23
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_14143
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 2_0263 Most representative HarvEST:Barley Assembly #32 Unigene = 1887 Most representative HarvEST:Barley Assembly #35 Unigene = 14143 HarvEST Unigene 35 Probe Set = Contig2789_at; Contig2790_s_at Unigene 35 Rice Locus = LOC_Os12g43490 Description for best rice BLAST hit to Unigene 35 member = alpha-amylase/trypsin inhibitor, putative, expressed; E value = 1E-100 Marker name in barley Pilot OPA2 = 2_0263 Original SNP name = 1887-868 HarvEST Unigene 35 Probe Set = Contig2789_at, Contig2790_s_at Description for best rice BLAST hit to Unigene 35 member = protein alpha-amylase/trypsin inhibitor, putative, expressed; E value = 1E-100 BLAST hit in the rice genome = alpha-amylase/trypsin inhibitor, putative, expressed
Probe for Locus	HAR35_14143
Locus	POPA2_0263
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare